I have lots of pictures, too, but I didn't always take pictures where I should have. I'm expecting to have trouble reassembling the clutch and the pedals and linkages around there...
When I pulled apart the engine, transmission, and transfer case, I was very diligent about using baggies. And those (mostly) went back together without problems. But I didn't use baggies when I pulled things off the frame.
-Pau