Far be it from me to offer advice on this Tim, but it sounds to me like you're getting some kind of a cross feed maybe at the IGN switch? When I went from an ammeter to a volt meter, I remember having an issue getting wired up correctly as they don't connect the same. Now I know you have always used ammeters and no doubt it is wired right, so I wonder if you might change the terminal on the switch for the fuel sender/gauge and see what happens.
BTW, the voltage (6 or 12) makes no difference as far as the sender and gauge are concerned, but the ohms does have be the same on both. I believe 33-240 ohms is the most common, but if both aren't the same, you're going to have problems.